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SRX25562724: MAG_46
1 ILLUMINA (Illumina NovaSeq 6000) run: 437 spots, 7.1M bases, 1.8Mb downloads

Design: The pitcher fluid from three of the 10 pitchers in each treatment group were selected from three time points (3 plants x 3 treatments x 3 timepoints (day 1, 22, 55), n=27) for simultaneous DNA/RNA extractions for metagenomic and metatranscriptomic sequencing using the Qiagen AllPrep Bacteria DNA/RNA/Protein Kit (Cat 47054), according to manufacturer directions. Briefly, flash frozen samples were thawed and pelleted, pellets were resuspended in lysis solution and bead beat for 10 minutes at 2400 RPM after which 350 L of lysate was transferred to a spin column were the DNA was collected in the column and the flow through was further processed for RNA extraction. Samples were eluted in nuclease free water and stored at -20C until quantification and library preparation. Nucleic acids were quantified using a fluorometer (Qubit, Invitrogen). Libraries were prepared for the full 27 RNA samples using NEBNext rRNA Depletion Kit (NEB#E7850) and NEBNext Ultra II Directional RNA library prep kit for Illumina (NEB#E7760) using manufacturer protocols. Metagenomic libraries (DNA) were prepared for a subset of these samples (3 plants x 3 treatments x 2 timepoints (day 1, 55), n=18) using NEBNext Ultra II FS DNA library prep kit for Illumina (NEB#78055). Sequencing was done on a NovaSeq partial lane to a sequencing depth of 55 Gb per library at Novogene Co. (Sacramento, CA USA).
Submitted by: Boise State University
Study: Microbial community function increases host plant leaf growth in a pitcher plant experimental system
show Abstracthide Abstract
Across diverse ecosystems, microorganisms engage in complex relationships with host organisms having negative, neutral, or positive effects. However, the specific effects of leaf-associated microbial community functions on plant growth are poorly understood. This study aimed to evaluate mechanistic relationships Across diverse ecosystems, bacteria and their host organisms engage in complex relationships having negative, neutral, or positive interactions. However, the specific effects of leaf-associated bacterial community functions on plant growth are poorly understood. To address this gap, we explored the relationships between bacterial community function and host plant growth in the purple pitcher plant (Sarracenia purpurea). The main aim of our research was to investigate how different bacterial community functions affect the growth and nutrient content in the plant. Previous research had suggested that microbial communities may aid in prey decomposition and subsequent nutrient acquisition in carnivorous plants, including S. purpurea. However, the specific functional roles of these bacterial communities in plant growth and nutrient uptake are not well known. In this study, sterile, freshly opened leaves (pitchers) were inoculated with three functionally distinct, pre-assembled bacterial communities and effects examined over 8 weeks. Bacterial community composition and function were measured using physiological assays, metagenomics, and metatranscriptomics. Distinct bacterial functions affected plant traits; a bacterial community enriched in decomposition and secondary metabolite production traits was associated with larger leaves with almost double the biomass of control pitchers. Physiological differences in bacterial communities were supported by metatranscriptomic analysis; for example, the bacterial community with the highest chitinase activity had greater expression of transcripts associated with chitinase enzymes. The relationship between bacterial community function and plant growth observed here indicates potential mechanisms for host-associated bacterial functions to support plant health and growth.
Sample: MAG_46
SAMN42926054 • SRS22214815 • All experiments • All runs
Library:
Name: MAG_46
Instrument: Illumina NovaSeq 6000
Strategy: WGS
Source: METAGENOMIC
Selection: cDNA
Layout: SINGLE
Runs: 1 run, 437 spots, 7.1M bases, 1.8Mb
Run# of Spots# of BasesSizePublished
SRR300892644377.1M1.8Mb2024-08-01

ID:
34549930

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